GgaEX1041150 @ galGal4
Exon Skipping
Gene
ENSGALG00000004767 | ODF2
Description
outer dense fiber protein 2 [Source:RefSeq peptide;Acc:NP_001012817]
Coordinates
chr17:5119391-5122087:+
Coord C1 exon
chr17:5119391-5119462
Coord A exon
chr17:5120064-5120180
Coord C2 exon
chr17:5121978-5122087
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTTGTTTGCATTTGATTTAGGAA
3' ss Score
8.68
5' ss Seq
CGGGTATGT
5' ss Score
8.79
Exon sequences
Seq C1 exon
CAACTTCAGATGAGGCTTCAGGATAAAGAAAAAGAGATCAACAATCTTGCTGTTCAGATACAGGAAGAAAAG
Seq A exon
GAACAGGCAAGGACAGCGAGTGAGCTCTCAAAATCCTTGGAATCTGTGAGAGGCCATCTACAAGCACAGCTACGACATAAGGAAGCTGAGAACAACCGTCTGACGACGCAGATCCGG
Seq C2 exon
GACAGTTACGTTGCAGAGGCGCTTTCTACCCTGGAGTCTTGGAGGAGTCGCTACAACAAAGTAGTGAAGGATAAGAGCGACCTTGAGTTGGAGATGGTTACAGTGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004767_MULTIEX2-2/3=1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.708 A=0.897 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTTCAGATGAGGCTTCAGGA
R:
TCACTGTAACCATCTCCAACTCA
Band lengths:
178-295
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]