DreEX0054442 @ danRer10
Exon Skipping
Gene
ENSDARG00000059054 | pdk2b
Description
pyruvate dehydrogenase kinase, isozyme 2b [Source:ZFIN;Acc:ZDB-GENE-040426-939]
Coordinates
chr19:5757824-5760259:+
Coord C1 exon
chr19:5757824-5757965
Coord A exon
chr19:5759902-5759973
Coord C2 exon
chr19:5760075-5760259
Length
72 bp
Sequences
Splice sites
3' ss Seq
CTTCTCTGTTACCCTCTCAGGTT
3' ss Score
10.49
5' ss Seq
AGAGTAGGT
5' ss Score
4.84
Exon sequences
Seq C1 exon
GAACTACAAATGCATGCGAGAAAACATCCTTCGCTTTCCTCAGACAGGAGCTCCCAGTGAGAATGAGCAACAGTTTGAAGGAGATCAGCCTTTTACCAGACCAACTAATAGAGACTCAGTCTGTGCAGCTGGTGCACAGCTG
Seq A exon
GTTTGTCCAAAGTCTGATGGACATCCTGGAATTCCAAGACAAGTGTCCTGATGATCCCAGAGTTCTCGCAGA
Seq C2 exon
ATTTGTGGAAACTCTGGTGACCATTAGGAACAGGCACAATGACGTGGTGCCAACCATGGCTCAGGGCGTCATCGAGTATAGAGACACGTTCGGGGCAGATCCTGTGACAAGTCAGAACATTCAGTACTTTCTGGACCGCTTTTACATGAGCCGTGTTTCCATTCGCATGCTCATCAACCAGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059054_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=FE(28.5=100)
A:
PF104364=BCDHK_Adom3=FE(14.5=100)
C2:
PF104364=BCDHK_Adom3=FE(37.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGAGAAAACATCCTTCGCT
R:
CACGTCATTGTGCCTGTTCCT
Band lengths:
174-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]