RnoEX6049283 @ rn6
Exon Skipping
Gene
ENSRNOG00000004172 | Pdk2
Description
pyruvate dehydrogenase kinase 2 [Source:RGD Symbol;Acc:69428]
Coordinates
chr10:82843307-82850795:-
Coord C1 exon
chr10:82850654-82850795
Coord A exon
chr10:82843948-82844019
Coord C2 exon
chr10:82843307-82843491
Length
72 bp
Sequences
Splice sites
3' ss Seq
ACCCCTCTGCTTTCACACAGGTA
3' ss Score
10.6
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
GATCCAGCAATGCCTGCGAGAAAACTTCATTCACCTTCCTCCGGCAGGAGCTGCCCGTGCGCCTGGCCAACATCATGAAAGAGATCAACCTGCTTCCTGACCGGGTGCTGAGCACCCCCTCAGTGCAACTGGTGCAGAGCTG
Seq A exon
GTATGTCCAGAGTCTGCTGGACATCATGGAATTCCTGGACAAGGACCCCGAGGACCACCGGACCCTAAGCCA
Seq C2 exon
GTTCACTGATGCCCTGGTCACCATCCGGAACCGGCACAATGACGTAGTGCCCACCATGGCACAGGGAGTGTTGGAGTACAAGGACACCTATGGTGATGACCCAGTCTCCAACCAGAACATCCAGTACTTTTTGGACCGCTTCTACCTCAGCCGCATCTCTATCCGCATGCTCATTAACCAGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004172-'6-6,'6-5,10-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=FE(28.5=100)
A:
PF104364=BCDHK_Adom3=FE(14.5=100)
C2:
PF104364=BCDHK_Adom3=FE(37.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCAACCTGCTTCCTGACCG
R:
TGTTCTGGTTGGAGACTGGGT
Band lengths:
179-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]