MmuEX6089015 @ mm10
Exon Skipping
Gene
ENSMUSG00000038967 | Pdk2
Description
pyruvate dehydrogenase kinase, isoenzyme 2 [Source:MGI Symbol;Acc:MGI:1343087]
Coordinates
chr11:95031836-95039490:-
Coord C1 exon
chr11:95039349-95039490
Coord A exon
chr11:95032465-95032536
Coord C2 exon
chr11:95031836-95032020
Length
72 bp
Sequences
Splice sites
3' ss Seq
ACTTCTCTGCTTTCACACAGGTA
3' ss Score
10.05
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
GATCCAGCAATGCCTGCGAGAAGACGTCATTCACTTTCCTCCGGCAGGAGCTGCCCGTTCGCCTGGCCAACATCATGAAAGAGATCAACCTGCTTCCTGACCGAGTGCTGGGCACCCCATCGGTGCAGCTGGTGCAGAGCTG
Seq A exon
GTATGTCCAGAGTCTGCTGGACATCATGGAATTCCTGGACAAAGACCCCGAGGACCACCGGACTCTAAGCCA
Seq C2 exon
GTTCACAGATGCCCTGGTCACCATCCGGAACCGGCACAATGACGTGGTGCCCACCATGGCACAGGGAGTGCTGGAGTACAAGGACACCTATGGAGATGACCCCGTCTCCAACCAGAACATCCAGTACTTCCTGGACCGCTTCTACCTCAGCCGCATCTCCATCCGAATGCTAATCAATCAACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038967-'9-6,'9-4,10-6=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=FE(28.5=100)
A:
PF104364=BCDHK_Adom3=FE(14.5=100)
C2:
PF104364=BCDHK_Adom3=FE(37.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCAACCTGCTTCCTGACCG
R:
GATGTTCTGGTTGGAGACGGG
Band lengths:
181-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types