BtaEX0026437 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008744 | PDK2
Description
Bos taurus pyruvate dehydrogenase kinase, isozyme 2 (PDK2), transcript variant 1, mRNA. [Source:RefSeq mRNA;Acc:NM_001159481]
Coordinates
chr19:37183850-37191848:-
Coord C1 exon
chr19:37191750-37191848
Coord A exon
chr19:37184348-37184419
Coord C2 exon
chr19:37183850-37184034
Length
72 bp
Sequences
Splice sites
3' ss Seq
CCCCCTCCCCTCCTGTATAGGTA
3' ss Score
11.46
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
GCAGGAGCTGCCTGTGCGCCTGGCCAACATCATGAAGGAGATCAACCTGCTTCCTGACCGGGTGCTGAGCACACCCTCGGTGCAGCTGGTACAGAGCTG
Seq A exon
GTATGTCCAGAGTCTCCTGGACATCATGGAGTTCCTGGACAAGGACCCTGAGGACCATCGGACCCTGAGCCA
Seq C2 exon
GTTCACTGACGCCCTGGTCACCATCCGGAACCGCCACAATGACGTGGTGCCCACAATGGCTCAGGGCGTGCTGGAGTACAAGGACACCTATGGCGATGACCCCGTCTCCAACCAGAACATCCAGTACTTCCTGGACCGCTTCTACCTCAGCCGCATCTCCATCCGCATGCTCATCAACCAGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008744-'7-8,'7-7,10-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=PU(17.1=95.7)
A:
PF104364=BCDHK_Adom3=FE(14.5=100)
C2:
PF104364=BCDHK_Adom3=FE(37.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCAACCTGCTTCCTGACCG
R:
GATGTTCTGGTTGGAGACGGG
Band lengths:
181-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development