MmuEX6089015 @ mm9
Exon Skipping
Gene
ENSMUSG00000038967 | Pdk2
Description
pyruvate dehydrogenase kinase, isoenzyme 2 [Source:MGI Symbol;Acc:MGI:1343087]
Coordinates
chr11:94893150-94900804:-
Coord C1 exon
chr11:94900663-94900804
Coord A exon
chr11:94893779-94893850
Coord C2 exon
chr11:94893150-94893334
Length
72 bp
Sequences
Splice sites
3' ss Seq
ACTTCTCTGCTTTCACACAGGTA
3' ss Score
10.05
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
GATCCAGCAATGCCTGCGAGAAGACGTCATTCACTTTCCTCCGGCAGGAGCTGCCCGTTCGCCTGGCCAACATCATGAAAGAGATCAACCTGCTTCCTGACCGAGTGCTGGGCACCCCATCGGTGCAGCTGGTGCAGAGCTG
Seq A exon
GTATGTCCAGAGTCTGCTGGACATCATGGAATTCCTGGACAAAGACCCCGAGGACCACCGGACTCTAAGCCA
Seq C2 exon
GTTCACAGATGCCCTGGTCACCATCCGGAACCGGCACAATGACGTGGTGCCCACCATGGCACAGGGAGTGCTGGAGTACAAGGACACCTATGGAGATGACCCCGTCTCCAACCAGAACATCCAGTACTTCCTGGACCGCTTCTACCTCAGCCGCATCTCCATCCGAATGCTAATCAATCAACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038967-'4-4,'4-3,6-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=FE(28.5=100)
A:
PF104364=BCDHK_Adom3=FE(14.5=100)
C2:
PF104364=BCDHK_Adom3=FE(37.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCAACCTGCTTCCTGACCG
R:
GATGTTCTGGTTGGAGACGGG
Band lengths:
181-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: