DreEX0057688 @ danRer10
Exon Skipping
Gene
ENSDARG00000079366 | ppp1r9ba
Description
protein phosphatase 1, regulatory subunit 9Ba [Source:ZFIN;Acc:ZDB-GENE-091006-1]
Coordinates
chr3:23178594-23187669:+
Coord C1 exon
chr3:23178594-23178729
Coord A exon
chr3:23185300-23185443
Coord C2 exon
chr3:23187616-23187669
Length
144 bp
Sequences
Splice sites
3' ss Seq
TTTCTGTCTGTTCTTTTCAGACG
3' ss Score
10.6
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
GTTTGTGATTGGCCGAGAGAAGCCGGGGGAACAGAGTGAAGTGGCCCAGCTGATCCAGCAGACTCTGGAGCAAGAGAGATGGCAGAGAGAGATGATGGAGCAGCGCTACAACCCCTACATGGAGGAGGATGAAGAG
Seq A exon
ACGGGTGAATGTGCCACCGATGAAGAGGAAGAGATGAGCCCCATGTTTCCTAATGCCATTGAGGTGTTTGATCTGGCAGAGAATGAAGACATGCTCTCTCCTGTGGAGATGGACCCAGAGAAACTGGCTCACAAGTTTAAGGAG
Seq C2 exon
CTCCAGATCAAACATGCTGTGACTCAGGCTGAGATCCAACAGCTCAAGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079366-'5-9,'5-8,6-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.696 A=0.708 C2=0.222
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PD(4.7=8.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGATTGGCCGAGAGAAGC
R:
TCCTCTTGAGCTGTTGGATCTCA
Band lengths:
186-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]