MmuEX6089002 @ mm10
Exon Skipping
Gene
ENSMUSG00000038976 | Ppp1r9b
Description
protein phosphatase 1, regulatory subunit 9B [Source:MGI Symbol;Acc:MGI:2387581]
Coordinates
chr11:95001219-95002132:+
Coord C1 exon
chr11:95001219-95001354
Coord A exon
chr11:95001842-95001994
Coord C2 exon
chr11:95002079-95002132
Length
153 bp
Sequences
Splice sites
3' ss Seq
TTGCCTGCATCCCTCCACAGACA
3' ss Score
9.85
5' ss Seq
GAGGTTGGA
5' ss Score
2.95
Exon sequences
Seq C1 exon
GTTCATGATTGGCCGGGAGCGGCCTGGAGAACAGAGTGAAGTGGCCCAGCTAATTCAGCAGACCTTGGAGCAGGAGCGATGGCAGCGGGAGATGATGGAGCAGAGATACGCCCAGTATGGAGAGGATGATGAGGAG
Seq A exon
ACAGGAGAGTATGCCACCGACGAAGATGAAGAACTGAGCCCAACGTTCCCAGGGGGTGAAATGGCCATTGAGGTGTTTGAACTAGCAGAGAACGAGGATGCGCTGTCCCCCGTGGAGATGGAGCCCGAAAAGCTGGTGCACAAGTTCAAGGAG
Seq C2 exon
CTCCAGATCAAGCATGCTGTCACTGAAGCGGAAATCCAGCAGCTGAAACGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038976-'15-14,'15-11,19-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.608 C2=0.056
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PD(4.7=8.7)
A:
PF104734=CENP-F_leu_zip=PU(27.3=47.1)
C2:
PF104734=CENP-F_leu_zip=FE(19.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCATGATTGGCCGGGAGC
R:
CTTCCGTTTCAGCTGCTGGAT
Band lengths:
190-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types