HsaEX0049644 @ hg19
Exon Skipping
Gene
ENSG00000108819 | PPP1R9B
Description
protein phosphatase 1, regulatory subunit 9B [Source:HGNC Symbol;Acc:9298]
Coordinates
chr17:48216628-48217593:-
Coord C1 exon
chr17:48217458-48217593
Coord A exon
chr17:48216794-48216946
Coord C2 exon
chr17:48216628-48216681
Length
153 bp
Sequences
Splice sites
3' ss Seq
TCTCCGGTCTCCCTTCGCAGACG
3' ss Score
11.81
5' ss Seq
GAGGTGGGA
5' ss Score
4.3
Exon sequences
Seq C1 exon
GTTTATGATTGGCCGGGAGCGGCCGGGAGAGCAGAGCGAAGTGGCCCAGCTAATTCAGCAGACTTTGGAACAGGAGCGATGGCAGCGGGAGATGATGGAGCAGAGATACGCCCAGTATGGGGAGGATGACGAGGAG
Seq A exon
ACGGGAGAGTATGCCACTGACGAGGATGAGGAGCTGAGCCCCACGTTCCCGGGTGGTGAGATGGCCATCGAGGTGTTTGAGCTAGCGGAGAACGAGGATGCACTGTCCCCTGTGGACATGGAGCCCGAGAAGCTGGTGCACAAGTTCAAGGAG
Seq C2 exon
CTCCAGATCAAGCATGCGGTCACTGAGGCAGAGATCCAGCAGCTGAAAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000108819_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTATGATTGGCCGGGAGCG
R:
TCTTTTCAGCTGCTGGATCTCTG
Band lengths:
187-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)