Special

GgaEX1045616 @ galGal4

Exon Skipping

Gene
Description
protein phosphatase 1, regulatory subunit 9A [Source:HGNC Symbol;Acc:HGNC:14946]
Coordinates
chr2:23935791-23949393:+
Coord C1 exon
chr2:23935791-23935926
Coord A exon
chr2:23943691-23943846
Coord C2 exon
chr2:23949340-23949393
Length
156 bp
Sequences
Splice sites
3' ss Seq
TTAAATGCTATGAAATTAAGACA
3' ss Score
-2.15
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTTTGTAATTGGCCGAGAAAAACCAGGCCAAGTGAGCGAGGTTGCGCAGCTGATTAGCCAAACTCTGGAACAAGAACGCCGCCAGAGAGAGCTCCTGGAGCAGCATTATGCACAGTACGATGCAGATGATGATGAG
Seq A exon
ACAGGGGAATATGCTACAGATGAAGAAGATGATGACATGGGACCTGTCCTTCCTGGAGGTGACATAGCTATTGAAGTGTTCGATCTTCCTGAGAATGACGACATGTTCTCCCCCAGTGATGTGGACACCAGCAAGCTCGCTCACAAGTTCAAAGAG
Seq C2 exon
TTGCAAATCAAACATGCAGTTACAGAAGCTGAAATTCAGAAGCTGAAGACGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009686-'13-17,'13-15,15-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.457 A=0.519 C2=0.111
Domain overlap (PFAM):

C1:
PF0059519=PDZ=PD(4.7=8.7)
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTAATTGGCCGAGAAAAACCAGG
R:
TCAGCTTCTGAATTTCAGCTTCTGT
Band lengths:
178-334
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]