DreEX6074059 @ danRer10
Exon Skipping
Gene
ENSDARG00000061304 | ppp1r9a
Description
protein phosphatase 1, regulatory subunit 9A [Source:ZFIN;Acc:ZDB-GENE-060503-660]
Coordinates
chr19:41540068-41552081:+
Coord C1 exon
chr19:41540068-41540203
Coord A exon
chr19:41548684-41548836
Coord C2 exon
chr19:41552028-41552081
Length
153 bp
Sequences
Splice sites
3' ss Seq
TGGTGTGTGTTTGTGTTCAGACT
3' ss Score
7.55
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
Exon sequences
Seq C1 exon
ATTTGTGATTGGCCGAGAGCGTCCGGGACAGCAGAGTGAAGTGGCGCAGCTCATCAGTCAGACTTTGGAGCAGGAGAAACGTCAGAGAGAGATGATGGAGCAGCAATACGCACAATATGACGCGGATGACGATGAG
Seq A exon
ACTGGAGAATACGCCACCGATGAGGAGGAGGAGGCTGGACAGACGGGAACAGACAGAGATGTGGCCATTGAGGTTTTCGATTTACCCGAAAACGAGGACATCATCTCGCCGTCGGAAATGGATGCCACCAAACTGTTCCAGAAGTTTCGGGAG
Seq C2 exon
CTGCAGATTAAACACACTGTCACTGAAGCCGAGATCCAGAAACTCAAGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061304-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.696 A=0.588 C2=0.000
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PD(4.7=8.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGTGATTGGCCGAGAGCG
R:
CTCTTGAGTTTCTGGATCTCGGC
Band lengths:
186-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]