RnoEX0068934 @ rn6
Exon Skipping
Gene
ENSRNOG00000008869 | Ppp1r9a
Description
protein phosphatase 1, regulatory subunit 9A [Source:RGD Symbol;Acc:632280]
Coordinates
chr4:30159755-30194439:+
Coord C1 exon
chr4:30159755-30159890
Coord A exon
chr4:30182382-30182537
Coord C2 exon
chr4:30194386-30194439
Length
156 bp
Sequences
Splice sites
3' ss Seq
TTCATTCCCCTTCCTTTCAGACC
3' ss Score
10.85
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GTTTGTTATTGGACGAGAAAAACCAGGACAAGTGAGTGAGGTTGCCCAGTTGATCAGCCAGACCCTGGAACAAGAGAGGAGACAGAGGGAGCTGCTCGAACGCCACTACGCCCAGTATGATGCTGACGACGATGAG
Seq A exon
ACCGGAGAATATGCCACTGATGAAGAAGAAGATGAGGTTGGACCCATTCTTCCTGGTGGTGACATGGCCATTGAAGTCTTCGAGCTCCCTGAGAATGAGGACATGTTTTCCCCATCTGACTTGGATACAAGCAAGCTCAGTCACAAGTTCAAAGAG
Seq C2 exon
TTGCAAATCAAACATGCAGTTACAGAAGCAGAGATTCAAAAATTGAAGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008869_MULTIEX3-2/3=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.372 A=0.599 C2=0.056
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PD(4.7=8.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTATTGGACGAGAAAAACCAGGA
R:
TCAATTTTTGAATCTCTGCTTCTGT
Band lengths:
179-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]