BtaEX6026285 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024426 | PPP1R9A
Description
protein phosphatase 1, regulatory subunit 9A [Source:HGNC Symbol;Acc:HGNC:14946]
Coordinates
chr4:12289435-12322014:+
Coord C1 exon
chr4:12289435-12289500
Coord A exon
chr4:12308313-12308468
Coord C2 exon
chr4:12321961-12322014
Length
156 bp
Sequences
Splice sites
3' ss Seq
TGAAGTTCCCTTCCTTTTAGACA
3' ss Score
7.1
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
AACACTGTGGCTGAATTGCAAGGAGTGTCTGGCAACTGCAATAACAATAACAACTATTTCCTAAAG
Seq A exon
ACAGGAGAATATGCCACAGATGAAGAGGAGGACGACGTAGGGCCTGTTCTTCCTGGAGGCGACATGGCCATCGAAGTCTTCGAGCTGCCTGAGAACGAGGACGTGTTTTCCCCCTCAGACCTGGATACAAGCAAGCTCAGTCACAAGTTCAAAGAG
Seq C2 exon
TTGCAAATCAAACATGCAGTTACAGAAGCAGAGATTCAAAAATTGAAGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024426-'15-15,'15-14,16-15=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=0.548 C2=0.056
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACTGTGGCTGAATTGCAA
R:
TTTGAATCTCTGCTTCTGTAACTGC
Band lengths:
106-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]