MmuEX0036736 @ mm10
Exon Skipping
Gene
ENSMUSG00000032827 | Ppp1r9a
Description
protein phosphatase 1, regulatory (inhibitor) subunit 9A [Source:MGI Symbol;Acc:MGI:2442401]
Coordinates
chr6:5077480-5111053:+
Coord C1 exon
chr6:5077480-5077615
Coord A exon
chr6:5100432-5100587
Coord C2 exon
chr6:5111000-5111053
Length
156 bp
Sequences
Splice sites
3' ss Seq
TGCGCTCCCCTTCTTTTCAGACT
3' ss Score
10.38
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
ATTCGTTATTGGACGAGAAAAACCAGGACAAGTGAGTGAGGTTGCCCAGTTGATCAGCCAGACCCTGGAACAAGAGCGGCGACAGCGGGAGCTTCTGGAGCGTCACTATGCCCAGTATGATGCTGACGACGATGAG
Seq A exon
ACTGGAGAGTATGCCACTGATGAAGAAGAGGATGAGGGCGGGCCTATTCTTCCTAGTGGTGACGTGGCCATTGAGGTCTTTGAGCTGCCTGAGAACGAGGACATGTTTTCCCCATCTGACCTGGACACAAGCAAGCTCAGCCACAAGTTCAAAGAG
Seq C2 exon
TTGCAAATCAAACATGCAGTTACAGAAGCAGAGATTCAAAAATTGAAGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032827_MULTIEX3-2/3=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.395 A=0.538 C2=0.067
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PD(4.7=8.7)
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTATTGGACGAGAAAAACCAGG
R:
TCAATTTTTGAATCTCTGCTTCTGT
Band lengths:
179-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types