GgaEX1045616 @ galGal3
Exon Skipping
Gene
ENSGALG00000009686 | PPP1R9A
Description
NA
Coordinates
chr2:23766298-23780800:+
Coord C1 exon
chr2:23766298-23766433
Coord A exon
chr2:23775098-23775253
Coord C2 exon
chr2:23780747-23780800
Length
156 bp
Sequences
Splice sites
3' ss Seq
TTAAATGCTATGAAATTAAGACA
3' ss Score
-2.15
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTTTGTAATTGGCCGAGAAAAACCAGGCCAAGTGAGCGAGGTTGCGCAGCTGATTAGCCAAACTCTGGAACAAGAACGCCGCCAGAGAGAGCTCCTGGAGCAGCATTATGCACAGTACGATGCAGATGATGATGAG
Seq A exon
ACAGGGGAATATGCTACAGATGAAGAAGATGATGACATGGGACCTGTCCTTCCTGGAGGTGACATAGCTATTGAAGTGTTCGATCTTCCTGAGAATGACGACATGTTCTCCCCCAGTGATGTGGACACCAGCAAGCTCGCTCACAAGTTCAAAGAG
Seq C2 exon
TTGCAAATCAAACATGCAGTTACAGAAGCTGAAATTCAGAAGCTGAAGACGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009686-'4-8,'4-6,5-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.457 A=0.519 C2=0.111
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PD(4.7=8.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAATTGGCCGAGAAAAACCAGG
R:
TCAGCTTCTGAATTTCAGCTTCTGT
Band lengths:
178-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]