HsaEX0049640 @ hg19
Exon Skipping
Gene
ENSG00000158528 | PPP1R9A
Description
protein phosphatase 1, regulatory subunit 9A [Source:HGNC Symbol;Acc:14946]
Coordinates
chr7:94827661-94876838:+
Coord C1 exon
chr7:94827661-94827796
Coord A exon
chr7:94855273-94855428
Coord C2 exon
chr7:94876785-94876838
Length
156 bp
Sequences
Splice sites
3' ss Seq
TGAAATCCCCTTCCTTTCAGACA
3' ss Score
8.23
5' ss Seq
GAGGTATGC
5' ss Score
9.12
Exon sequences
Seq C1 exon
ATTTGTTATTGGGCGGGAAAAACCAGGACAAGTGAGCGAGGTTGCCCAGTTGATAAGCCAGACACTGGAACAGGAGAGGCGCCAGAGAGAGCTGCTGGAACAGCACTATGCCCAGTATGATGCCGACGATGACGAG
Seq A exon
ACAGGAGAATATGCCACAGATGAAGAAGAAGATGAGGTAGGACCTGTCCTTCCTGGCAGCGACATGGCCATTGAAGTCTTTGAGCTGCCTGAGAATGAGGACATGTTTTCCCCATCAGAACTGGACACAAGCAAGCTCAGTCACAAGTTCAAAGAG
Seq C2 exon
TTGCAAATCAAACATGCAGTTACAGAAGCAGAGATTCAAAAATTGAAGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158528_MULTIEX1-3/4=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.432 A=0.624 C2=0.069
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PD(4.7=8.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTATTGGGCGGGAAAAACCA
R:
TCAATTTTTGAATCTCTGCTTCTGT
Band lengths:
179-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)