HsaEX0049644 @ hg38
Exon Skipping
Gene
ENSG00000108819 | PPP1R9B
Description
protein phosphatase 1 regulatory subunit 9B [Source:HGNC Symbol;Acc:HGNC:9298]
Coordinates
chr17:50139263-50140228:-
Coord C1 exon
chr17:50140093-50140228
Coord A exon
chr17:50139429-50139581
Coord C2 exon
chr17:50139263-50139316
Length
153 bp
Sequences
Splice sites
3' ss Seq
TCTCCGGTCTCCCTTCGCAGACG
3' ss Score
11.81
5' ss Seq
GAGGTGGGA
5' ss Score
4.3
Exon sequences
Seq C1 exon
GTTTATGATTGGCCGGGAGCGGCCGGGAGAGCAGAGCGAAGTGGCCCAGCTAATTCAGCAGACTTTGGAACAGGAGCGATGGCAGCGGGAGATGATGGAGCAGAGATACGCCCAGTATGGGGAGGATGACGAGGAG
Seq A exon
ACGGGAGAGTATGCCACTGACGAGGATGAGGAGCTGAGCCCCACGTTCCCGGGTGGTGAGATGGCCATCGAGGTGTTTGAGCTAGCGGAGAACGAGGATGCACTGTCCCCTGTGGACATGGAGCCCGAGAAGCTGGTGCACAAGTTCAAGGAG
Seq C2 exon
CTCCAGATCAAGCATGCGGTCACTGAGGCAGAGATCCAGCAGCTGAAAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000108819_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.608 C2=0.056
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PD(4.7=8.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTATGATTGGCCGGGAGCG
R:
TCTTTTCAGCTGCTGGATCTCTG
Band lengths:
187-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development