RnoEX0068936 @ rn6
Exon Skipping
Gene
ENSRNOG00000052113 | Ppp1r9b
Description
protein phosphatase 1, regulatory subunit 9B [Source:RGD Symbol;Acc:632281]
Coordinates
chr10:82811042-82811935:+
Coord C1 exon
chr10:82811042-82811177
Coord A exon
chr10:82811647-82811799
Coord C2 exon
chr10:82811882-82811935
Length
153 bp
Sequences
Splice sites
3' ss Seq
TTGCCTGTATCCTTCCACAGACA
3' ss Score
10.25
5' ss Seq
GAGGTTGGA
5' ss Score
2.95
Exon sequences
Seq C1 exon
GTTCATGATTGGCCGGGAGCGGCCTGGAGAACAGAGTGAAGTGGCCCAGCTAATTCAGCAGACCTTGGAGCAGGAGAGGTGGCAGCGGGAGATGATGGAGCAGAGATACGCCCAGTATGGAGAAGACGATGAGGAG
Seq A exon
ACAGGAGAGTATGCCACCGATGAAGATGAAGAACTGAGCCCGACATTTCCAGGGGGTGAAATGGCCATCGAGGTGTTTGAACTAGCAGAGAATGAGGATGCACTGTCCCCTGTGGAGATGGAGCCTGAAAAGCTGGTGCACAAGTTCAAGGAG
Seq C2 exon
CTCCAGATCAAGCATGCTGTCACTGAAGCGGAAATCCAGCAGCTGAAGCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052113-'15-10,'15-7,17-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.608 C2=0.056
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PD(4.7=8.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCATGATTGGCCGGGAGC
R:
CGCTTCAGCTGCTGGATTTCC
Band lengths:
186-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]