DreEX0060183 @ danRer10
Exon Skipping
Gene
ENSDARG00000074246 | rab14
Description
RAB14, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-030826-20]
Coordinates
chr5:62698048-62701000:+
Coord C1 exon
chr5:62698048-62698101
Coord A exon
chr5:62700656-62700833
Coord C2 exon
chr5:62700934-62701000
Length
178 bp
Sequences
Splice sites
3' ss Seq
GTTTTCTTTTTATTTTTAAGTTA
3' ss Score
8.99
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
GTGACATGGGGGTTGGCAAGTCCTGTTTACTCCACCAGTTCACAGAAAAGAAAT
Seq A exon
TTATGGCTGACTGTCCTCATACAATCGGTGTTGAGTTTGGCACACGGATAATTGAAGTGAGTGGGCAGAAGGTGAAGCTTCAGATTTGGGACACGGCAGGTCAGGAGAGGTTTCGTGCTGTCACACGCAGCTACTACAGAGGAGCCGCTGGGGCCCTCATGGTGTATGACATCACCAG
Seq C2 exon
GCGAAGCACGTACAATCACCTTAGCAGCTGGCTGACTGATGCCAGGAATCTCACCAACCCCAATACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074246-'3-6,'3-5,5-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0007117=Ras=FE(26.5=100)
A:
PF0007117=Ras=FE(36.4=100)
C2:
PF0007117=Ras=FE(13.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACATGGGGGTTGGCAAGTC
R:
TGGGGTTGGTGAGATTCCTGG
Band lengths:
114-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]