RnoEX6016598 @ rn6
Exon Skipping
Gene
ENSRNOG00000018901 | Rab14
Description
RAB14, member RAS oncogene family [Source:RGD Symbol;Acc:620881]
Coordinates
chr3:14379836-14384501:-
Coord C1 exon
chr3:14384448-14384501
Coord A exon
chr3:14382899-14383076
Coord C2 exon
chr3:14379836-14379902
Length
178 bp
Sequences
Splice sites
3' ss Seq
TATTTTCTTTTCTCCAACAGTTA
3' ss Score
9.35
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GGGATATGGGAGTAGGAAAATCTTGCTTGCTTCATCAATTTACAGAAAAAAAGT
Seq A exon
TTATGGCTGATTGTCCTCACACAATTGGTGTTGAATTTGGTACAAGAATAATTGAAGTTAGTGGCCAAAAAATCAAACTGCAGATTTGGGATACAGCAGGACAGGAGAGGTTCAGAGCTGTTACACGGAGCTACTATAGAGGAGCTGCAGGTGCGCTCATGGTGTATGACATCACCAG
Seq C2 exon
AAGAAGTACATATAACCACTTAAGCAGCTGGTTGACAGATGCAAGGAACCTCACCAACCCAAACACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018901-'8-13,'8-10,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0007117=Ras=FE(11.1=100)
A:
PF0007117=Ras=FE(36.4=100)
C2:
PF0007117=Ras=FE(13.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGTAGGAAAATCTTGCTTGCT
R:
AGTGTTTGGGTTGGTGAGGTT
Band lengths:
114-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]