GgaEX1047661 @ galGal3
Exon Skipping
Gene
ENSGALG00000001474 | RAB14_CHICK
Description
NA
Coordinates
chr17:9085771-9088645:-
Coord C1 exon
chr17:9088592-9088645
Coord A exon
chr17:9086956-9087133
Coord C2 exon
chr17:9085771-9085837
Length
178 bp
Sequences
Splice sites
3' ss Seq
CCTCTTCTTTTTCATGACAGTTA
3' ss Score
8.92
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GGGACATGGGTGTAGGAAAGTCCTGTTTGCTTCACCAATTCACGGAAAAGAAAT
Seq A exon
TTATGGCGGACTGTCCCCACACAATTGGTGTTGAATTTGGCACAAGAATAATTGAAGTTAGTGGCCAAAAAATTAAACTACAGATCTGGGATACAGCAGGACAAGAGAGATTCAGGGCTGTCACACGAAGCTATTACAGAGGAGCAGCAGGAGCTCTCATGGTCTATGACATTACCAG
Seq C2 exon
AAGAAGTACGTATAATCACTTAAGCAGCTGGCTGACAGATGCAAGGAATCTCACCAATCCAAATACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001474-'6-7,'6-6,10-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0007117=Ras=FE(11.1=100)
A:
PF0007117=Ras=FE(36.4=100)
C2:
PF0007117=Ras=FE(13.6=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACATGGGTGTAGGAAAGT
R:
TGGATTGGTGAGATTCCTTGCA
Band lengths:
115-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]