HsaEX0051571 @ hg19
Exon Skipping
Gene
ENSG00000119396 | RAB14
Description
RAB14, member RAS oncogene family [Source:HGNC Symbol;Acc:16524]
Coordinates
chr9:123949231-123954502:-
Coord C1 exon
chr9:123954449-123954502
Coord A exon
chr9:123952832-123953009
Coord C2 exon
chr9:123949231-123949297
Length
178 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTCCTCCTTAACAGTTA
3' ss Score
10.31
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
GGGACATGGGAGTAGGAAAATCTTGCTTGCTTCATCAATTTACAGAAAAAAAAT
Seq A exon
TTATGGCTGATTGTCCTCACACAATTGGTGTTGAATTTGGTACAAGAATAATCGAAGTTAGTGGCCAAAAAATAAAACTGCAGATTTGGGATACGGCAGGACAGGAGCGATTTAGGGCTGTTACACGGAGCTACTACAGAGGAGCTGCGGGAGCTCTTATGGTCTATGATATCACTAG
Seq C2 exon
AAGAAGTACATATAACCACTTAAGCAGCTGGTTGACAGATGCAAGGAATCTCACCAATCCAAATACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119396_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0007117=Ras=FE(11.1=100)
A:
PF0007117=Ras=FE(36.4=100)
C2:
PF0007117=Ras=FE(13.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACATGGGAGTAGGAAAATCT
R:
TGGATTGGTGAGATTCCTTGCA
Band lengths:
115-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)