GgaEX1047661 @ galGal4
Exon Skipping
Gene
ENSGALG00000001474 | RAB14
Description
Ras-related protein Rab-14 [Source:UniProtKB/Swiss-Prot;Acc:Q5ZKU5]
Coordinates
chr17:8380165-8392564:-
Coord C1 exon
chr17:8392378-8392564
Coord A exon
chr17:8382300-8382477
Coord C2 exon
chr17:8380165-8380252
Length
178 bp
Sequences
Splice sites
3' ss Seq
CCTCTTCTTTTTCATGACAGTTA
3' ss Score
8.92
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATCTTGGATAAGGGGGGTGATGGGGGCGCAGTGGAGCCAGCGGAGCAGAGCCTGAGAGAGCGCCGGAGTGAGGTGGGGACTCGGCCCGGCCGCTGCCCAGCACGAGCAGAGCGCTCCAGTGCCCGTAGGGGGACCGGGCTGCCGCCGGCAGAGCCACGCTGCACAGCCACACGCTCCCGGAGCCCAG
Seq A exon
TTATGGCGGACTGTCCCCACACAATTGGTGTTGAATTTGGCACAAGAATAATTGAAGTTAGTGGCCAAAAAATTAAACTACAGATCTGGGATACAGCAGGACAAGAGAGATTCAGGGCTGTCACACGAAGCTATTACAGAGGAGCAGCAGGAGCTCTCATGGTCTATGACATTACCAG
Seq C2 exon
GTGATAATCCTCATAGGAAATAAAGCAGATCTGGAAGCACAGAGGGATGTTACATATGAAGAAGCCAAACAATTTGCTGAAGAAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001474_MULTIEX1-4/5=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.033
Domain overlap (PFAM):
C1:
NA
A:
PF0007117=Ras=FE(36.4=100)
C2:
PF0007117=Ras=FE(17.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGGGGCGCAGTGGAG
R:
TCAGCAAATTGTTTGGCTTCTTCA
Band lengths:
249-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]