MmuEX6100831 @ mm10
Exon Skipping
Gene
ENSMUSG00000026878 | Rab14
Description
RAB14, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1915615]
Coordinates
chr2:35186674-35191565:-
Coord C1 exon
chr2:35191512-35191565
Coord A exon
chr2:35189900-35190077
Coord C2 exon
chr2:35186674-35186740
Length
178 bp
Sequences
Splice sites
3' ss Seq
TATTTCCTCTTCTCCAACAGTTA
3' ss Score
8.75
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GGGATATGGGAGTAGGAAAATCTTGCTTGCTTCATCAATTTACAGAAAAAAAAT
Seq A exon
TTATGGCTGATTGTCCTCACACAATTGGTGTTGAATTTGGTACAAGAATAATTGAAGTTAGTGGTCAAAAAATCAAACTGCAGATTTGGGATACAGCAGGGCAGGAGCGGTTCAGAGCGGTTACACGGAGCTACTATAGAGGAGCTGCAGGTGCGCTCATGGTGTATGACATCACCAG
Seq C2 exon
AAGAAGTACATATAACCACTTAAGCAGCTGGTTGACAGACGCAAGGAATCTCACCAATCCAAACACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026878-'11-9,'11-8,14-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0007117=Ras=FE(11.1=100)
A:
PF0007117=Ras=FE(36.4=100)
C2:
PF0007117=Ras=FE(13.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATATGGGAGTAGGAAAATCTTGC
R:
GGATTGGTGAGATTCCTTGCGT
Band lengths:
114-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types