DreEX0062189 @ danRer10
Exon Skipping
Gene
ENSDARG00000062650 | rif1
Description
replication timing regulatory factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3406]
Coordinates
chr9:22982338-22983002:+
Coord C1 exon
chr9:22982338-22982605
Coord A exon
chr9:22982682-22982724
Coord C2 exon
chr9:22982803-22983002
Length
43 bp
Sequences
Splice sites
3' ss Seq
TTTCTTAATTCATTTTTAAGTTG
3' ss Score
6.6
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
CTCCTCGTACACCCATGAGTTGGGTACGCAAGAGAAGCAGAGCCCTCGGGAATCTCTCAACCTTCCACACTCTTCTGATACAGACTCTAGAGGCTTTTCTCACTGCAGACCATTCAGAAGAATCTGCAGAGCCTTTAAATGGAATTGGCTCTGCCTTGGTGTCAATCTTGACCTCTCTTTTCACTAATATTACCCTTCCCTCATTCTTACAAGAGGTGCTCTCCAGCCTCACCAAACCACTTGCACGTCTTTATGAGCAGTTCTCCTG
Seq A exon
TTGTGATGACCCATCAAAGCTCAGTCCAGAACTAGGGCACAAG
Seq C2 exon
CTGGAGAAACTGGCCGCAGACTTGCTAGGCTGCCTTCAGACACATTTGACTCTCCATGATGATGAATTCCTCACTGTGTTGTCGCCCTTGCTTTGTGTACTTTTTTTGCACAAGAGCAAACAGGTTTGCTCTGTGGTCACTCAATTCTGGAATGCCACTTTTGGAAATGCGCTCACCTTGAGTTACCCAGAACCTCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062650-'26-37,'26-36,27-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAAGAGGTGCTCTCCAGCC
R:
GGCGACAACACAGTGAGGAAT
Band lengths:
147-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]