GgaEX0018879 @ galGal4
Exon Skipping
Gene
ENSGALG00000012484 | RIF1
Description
replication timing regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:23207]
Coordinates
chr7:34659995-34661753:+
Coord C1 exon
chr7:34659995-34660259
Coord A exon
chr7:34661215-34661257
Coord C2 exon
chr7:34661551-34661753
Length
43 bp
Sequences
Splice sites
3' ss Seq
ACCTTGTTTTGTTTTGGCAGGCT
3' ss Score
8.28
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CTCCACAGACACCTACTGACTGGTCTAAGAAGAAAAGGGAGCCCCTTGGGAAGCTCTCCTCCCTGTTCAAGCTTCTGGTGATGCTACTGGATTCCTTCCATGCTCTCAGTTCTGAAGAAACCTGCCCAGAACCATTGGCCTCTGTCGGTCATTCACTTATTGCTGTTCTTCACAACATCATCAGCCACGTTTCATTGCCTTCAATGATTGGGACTATGTTTGCAGTTTTTTCAAAACCACTGGCAGTATTTTATGAAAAAACAAA
Seq A exon
GCTTGCTGACGTACCTAAAGCATACAGTAACCTTAACAGCAAG
Seq C2 exon
CTTGAAAAACTCCTGGCTGAGATTATCCTGTGTTTGCAGTCCCACTGCATGGGCTGCTATGACAGTGAGCTCCTGGAGCAGCTTTCTCCATTGCTCTGTGTAATATTTCAGCATAAGAGCAAACAGATGCGCAAGCAGTGCGCCAACTTCTGGAACACAACATTTGCTAAGGCTGCATCGTTGACCTACCCTGAAGAATTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012484_MULTIEX1-20/22=19-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.124 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCAGCCACGTTTCATTGCC
R:
GTGGGACTGCAAACACAGGAT
Band lengths:
132-175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]