RnoEX0075838 @ rn6
Exon Skipping
Gene
ENSRNOG00000054901 | Rif1
Description
replication timing regulatory factor 1 [Source:RGD Symbol;Acc:1562474]
Coordinates
chr3:37628839-37631582:+
Coord C1 exon
chr3:37628839-37629103
Coord A exon
chr3:37629923-37629965
Coord C2 exon
chr3:37631380-37631582
Length
43 bp
Sequences
Splice sites
3' ss Seq
TCTTACATCTTTATTCCCAGGCT
3' ss Score
7.79
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
CACCACAGAGATCTTCAGATTGGTCCAGGAAGAAGAAGGAGCCCCTAGGGAAATTGGCTTCTTTATTTAAGCTAATCGTGAGAATCATCGATTCTTTCCACACTCTAAGCCTCAAGGAAACATACTCTGATACACTGCTTGCTATTGGTAACTCTATCATTAGCATGCTTTCCAATATATTTGGACATATTTCTTTGTCGTCTATGATCCGAGAAATATTTACAACTTTTACAAGACCCCTGGCTTTACTCTATGAAAATTCAAA
Seq A exon
GCTTGATGAGGTTCCTAAAGTGTATACTAGTTTGAACAACAAG
Seq C2 exon
TTAGAAAAGTTATTAGGAGAAATTGTTGCTTGTCTACAGTTCAACTATCTTGGAGCCTATGACAGTGAACTTCTTGGACAACTTTCTCCACTCCTGTGCATAATTTTTCTTCACAAGAATAAACAGATTCGGAAACAGAGTGCTGTGTTGTGGAATGCTACATTTGCTAAAGCAACAGCTCTGATCTATCCTGAGGAATTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054901-'28-26,'28-25,29-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGACCCCTGGCTTTACTCT
R:
GCACAGGAGTGGAGAAAGTTGT
Band lengths:
134-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]