DreEX0062194 @ danRer10
Exon Skipping
Gene
ENSDARG00000062650 | rif1
Description
replication timing regulatory factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3406]
Coordinates
chr9:22975698-22976213:+
Coord C1 exon
chr9:22975698-22975794
Coord A exon
chr9:22975889-22976019
Coord C2 exon
chr9:22976122-22976213
Length
131 bp
Sequences
Splice sites
3' ss Seq
ATATTCTTTCTTTGCTGCAGCAA
3' ss Score
8.98
5' ss Seq
ATGGTTTGT
5' ss Score
4.88
Exon sequences
Seq C1 exon
GTTCACATCTCCAGTGAGAATGAGGAGCTGTGTCAGGCTGCACTGCAGGCTTTGGGATTCTGTGTCTTCCACTCACACATAGTTTCAGTCATACCAG
Seq A exon
CAAATATTTCAGAGAATATATTGTCTACGCTCTGCAATGTTGTGGTAAAGTCCAAAGAGAAGTTTACGTGCACTCGGGCATTGTGGGTCATTTCAAAACAGAATTTCCCTCCAGAGGTGGCATCCAAAATG
Seq C2 exon
GCCCCAGAGATTCTCAAGAGCCTAGAAGCGATGCAGACCAGAGAGGTGCAGTCCATCCTCATTGACCACGAGTCACTCAATGTCATCATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062650-'5-10,'5-9,6-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF122313=Rif1_N=FE(9.2=100)
A:
PF122313=Rif1_N=FE(12.4=100)
C2:
PF122313=Rif1_N=FE(8.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCAGTGAGAATGAGGAGCT
R:
TGATGACATTGAGTGACTCGTGG
Band lengths:
178-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]