GgaEX0018881 @ galGal4
Exon Skipping
Gene
ENSGALG00000012484 | RIF1
Description
replication timing regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:23207]
Coordinates
chr7:34646697-34650032:+
Coord C1 exon
chr7:34646697-34646793
Coord A exon
chr7:34647870-34648000
Coord C2 exon
chr7:34649843-34650032
Length
131 bp
Sequences
Splice sites
3' ss Seq
GTGCTGCATTCTGCTTTCAGCAT
3' ss Score
8.58
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
GCACACATTTCTAGTGAAAATTCAGAGCTGAGTAACGCAGCATTACAGGCCTTGGGGTTCTGTGTTTTTAATTCGAAGATTACCTCTGAATTATCCG
Seq A exon
CATCTGAAGTAGAAGATTTGCTTTCCACATTGAACAGCATTGCTGTGAAGACTTCAGACAAAAACACTCGCACTCGGGCACTTTGGGTGATCTCTAAGCAGACGTTTCCTTCTGAAATTATTAAAAAGGAG
Seq C2 exon
CTTAATGGAGCAGGCTCCAGCCCAGATGGGAGAAGAGGCTGTGAGGTGGGCAAAGCTGATCATCCCACTGGTCGTCCATTCAGCTCACAAAGTGCAGTTACGAGGTGCCACTGCGCTGGAGATAGGCATGCCACTGCTGCTTCAGAAACAGCAGGAGGTGGCAGCTGTAACTGAGCATCTGATGACCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012484_MULTIEX1-1/22=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF122313=Rif1_N=FE(38.6=100)
A:
PF122313=Rif1_N=FE(12.0=100)
C2:
PF122313=Rif1_N=FE(17.5=100)
Main Skipping Isoform:
ENSGALT00000037786fB11463
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAACGCAGCATTACAGGCCT
R:
ATGCTCAGTTACAGCTGCCAC
Band lengths:
244-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]