GgaEX0018881 @ galGal3
Exon Skipping
Gene
ENSGALG00000012484 | RIF1
Description
NA
Coordinates
chr7:36773248-36775041:+
Coord C1 exon
chr7:36773248-36773344
Coord A exon
chr7:36774421-36774551
Coord C2 exon
chr7:36774947-36775041
Length
131 bp
Sequences
Splice sites
3' ss Seq
GTGCTGCATTCTGCTTTCAGCAT
3' ss Score
8.58
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
GCACACATTTCTAGTGAAAATTCAGAGCTGAGTAACGCAGCATTACAGGCCTTGGGGTTCTGTGTTTTTAATTCGAAGATTACCTCTGAATTATCCG
Seq A exon
CATCTGAAGTAGAAGATTTGCTTTCCACATTGAACAGCATTGCTGTGAAGACTTCAGACAAAAACACTCGCACTCGGGCACTTTGGGTGATCTCTAAGCAGACGTTTCCTTCTGAAATTATTAAAAAGGAG
Seq C2 exon
GTATCCAGTCTTATTTCTACACTGGAAACTATACTTACTAAAGGAGATGTACAGTCTATGATTGTGGAGTATGAAGCACTGAATGTTGTCATACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012484-'4-4,'4-2,5-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF122313=Rif1_N=FE(8.9=100)
A:
PF122313=Rif1_N=FE(12.0=100)
C2:
PF122313=Rif1_N=FE(8.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACACATTTCTAGTGAAAATTCAGA
R:
CGTATGACAACATTCAGTGCTTCA
Band lengths:
192-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]