DreEX0078839 @ danRer10
Exon Skipping
Gene
ENSDARG00000025920 | tiam1b
Description
T-cell lymphoma invasion and metastasis 1b [Source:ZFIN;Acc:ZDB-GENE-120221-1]
Coordinates
chr15:42578810-42584266:+
Coord C1 exon
chr15:42578810-42578918
Coord A exon
chr15:42581758-42581937
Coord C2 exon
chr15:42584148-42584266
Length
180 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTGTGTTTCCTCCAGCGA
3' ss Score
10.08
5' ss Seq
ACGGTCAGC
5' ss Score
5.3
Exon sequences
Seq C1 exon
AAGATCCTGTTTTCTCTGGGCGGCTCATTCCTGTATTACGCCGACCGCTTCAAGATCTACAGCGCCTTCTGTGCCAGCCACACCAAAGTGCCCAAAGTGCTGGTCAAAG
Seq A exon
CGAAGACAGACGCAGCCTTCAAGGCCTTTCTGGATGAACGTAACCCCAAACAGCAGCATTCGTCCACGCTGGAGTCATACCTGATCAAGCCCATCCAGAGAGTGCTGAAATACCCTCTGCTGCTGAGAGAACTACACTCGCTCACTGACCCTGACAGCGAAGAGCACTACCACCTCAACG
Seq C2 exon
TTGCAATGAAAGCCATGAACACAGTGGCCAGCCACATCAATGAGATGCAGAAGATCCACGAGGAGTTTGGAGCTGTGTTTGACCTCCTCATCTCTGAGCAGACTGGAGAAAAGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000025920-'28-26,'28-25,29-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(18.9=100)
A:
PF0062115=RhoGEF=FE(31.6=100)
C2:
PF0062115=RhoGEF=PD(7.4=35.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCTGTTTTCTCTGGGCGG
R:
CTCTTTCTTTTCTCCAGTCTGCTCA
Band lengths:
226-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]