DreEX6002512 @ danRer10
Exon Skipping
Gene
ENSDARG00000026855 | cacna2d4a
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4a [Source:ZFIN;Acc:ZDB-GENE-041210-213]
Coordinates
chr4:20558448-20558899:-
Coord C1 exon
chr4:20558810-20558899
Coord A exon
chr4:20558618-20558731
Coord C2 exon
chr4:20558448-20558526
Length
114 bp
Sequences
Splice sites
3' ss Seq
ATAAAAATCTGTGTGCGTAGGCA
3' ss Score
6.01
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
CACTTTAAGCTTTTGGTGCAGGAGTTGCAGGTAAAAGGTGAAGGAAAGGTGAAGAAAGCCATGAAAGAGTCCTTTAAGATTCTGAATGAG
Seq A exon
GCAGCAGCAGAAGGCAGGGGTAGTTTATGTAATCAGGCTATCATGCTGATCACTGATGGAGCCATGGAGGATTTCCAGCAGGTGTTTGAGGAGTTCAATTGGCCAGATCGCAAG
Seq C2 exon
GTGCGCGTGTTCACGTATCTGATTGGACGAGAGCTTACATTTGCCAGCAATGTCAAATGGATTGCTTGCAATAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026855-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF137681=VWA_3=FE(18.1=100)
A:
PF137681=VWA_3=FE(22.9=100)
C2:
PF137681=VWA_3=FE(15.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTTTAAGCTTTTGGTGCAGGA
R:
ATTGCAAGCAATCCATTTGACA
Band lengths:
162-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]