RnoEX6014847 @ rn6
Exon Skipping
Gene
ENSRNOG00000008031 | Cacna2d4
Description
calcium voltage-gated channel auxiliary subunit alpha2delta 4 [Source:RGD Symbol;Acc:1562038]
Coordinates
chr4:151330778-151331579:+
Coord C1 exon
chr4:151330778-151330867
Coord A exon
chr4:151330968-151331081
Coord C2 exon
chr4:151331501-151331579
Length
114 bp
Sequences
Splice sites
3' ss Seq
AGCTTCCTCCTTTTCCTCAGTTC
3' ss Score
7.15
5' ss Seq
AAGGTGACT
5' ss Score
6.64
Exon sequences
Seq C1 exon
CATTTCAAGCAGTTGGTGGATGAGCTGATGGTCAAAGGCGTGGGTATCGTGAGTCAAGCTCTAATTGAAGCTTTCCAGATCCTGAAGCAG
Seq A exon
TTCCAAGAGTCCAGACAAGGAAGCCTCTGCAACCAGGCTATCATGCTTGTCACCGACGGGGCTGTGGAAGACTATGAGCCCGTGTTTGAGACCTATAACTGGCCAGACCGTAAG
Seq C2 exon
GTCCGAGTTTTCACCTACCTTATTGGAAGAGAAGTGACTTTCGCTGACCGCATGAAATGGATCGCCTGCAACAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008031-'12-14,'12-12,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135191=VWA_2=FE(16.1=100)
A:
PF135191=VWA_2=FE(20.6=100)
C2:
PF135191=VWA_2=FE(14.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCAGTTGGTGGATGAGCTG
R:
CTTTATTGTTGCAGGCGATCCA
Band lengths:
163-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]