GgaEX6002684 @ galGal4
Exon Skipping
Gene
ENSGALG00000013007 | CACNA2D4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:HGNC Symbol;Acc:HGNC:20202]
Coordinates
chr1:61201104-61208429:-
Coord C1 exon
chr1:61208340-61208429
Coord A exon
chr1:61201999-61202112
Coord C2 exon
chr1:61201104-61201182
Length
114 bp
Sequences
Splice sites
3' ss Seq
GCTCTTCACTCTGCTTGCAGTTC
3' ss Score
8.48
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
CATTTCAAGCAGCTGGTGGACGAACTGCAGGCAAAAGGAGTGGGAACGGTGAACAAGGCCTTGACGGAGTCCTTCAAAATCCTGAGGGAG
Seq A exon
TTCAGAGACGCTGGCCAAGGGGGCTTGTGTAACCAAGCCATCATGCTGATCACAGACGGAGCAGTGGAGGATTATGAAGCTGTGTTTGAAAAGTACAACTGGCCAGATCGGAAG
Seq C2 exon
GTCCGGGTTTTCACTTACCTCATTGGACGGGAGGTCACTTTTGCCCCCAACGTGAAATGGATCGCTTGCAACAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013007-'11-10,'11-9,12-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF137681=VWA_3=FE(17.5=100)
A:
PF137681=VWA_3=FE(22.3=100)
C2:
PF137681=VWA_3=FE(15.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTCAAGCAGCTGGTGGACG
R:
TTTGTTGTTGCAAGCGATCCA
Band lengths:
167-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]