DreEX6102108 @ danRer10
Exon Skipping
Gene
ENSDARG00000023886 | cacna2d4b
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4b [Source:ZFIN;Acc:ZDB-GENE-100422-18]
Coordinates
chr25:18967097-18970755:-
Coord C1 exon
chr25:18970666-18970755
Coord A exon
chr25:18970463-18970576
Coord C2 exon
chr25:18967097-18967175
Length
114 bp
Sequences
Splice sites
3' ss Seq
GTTTTTCTTCCTGTCTCCAGGCC
3' ss Score
10.97
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
CATTTCAAGCTGCTTGTGGATGAGCTCCATGTAAAAGGGGAAGCTAAAGTGAAAAAAGCCATGAAGGAGTCTTTCCGTATCCTCGCTGAC
Seq A exon
GCCAGAGCAAATGGTCAGGGCAGCCTGTGCAACCAAGCAATTATGCTGATCACAGATGGAGCCATGGAGGATTTCCAGTCAGTTTTTGAGGAGTTCAACTGGCCTGACAAGAAG
Seq C2 exon
GTACGAGTTTTCACTTACCTCATTGGCAGAGACATGACCTTCTCAGAAAATGTCAAATGGATTGCCTGCAACAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000023886-'13-12,'13-11,14-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF137681=VWA_3=FE(17.5=100)
A:
PF137681=VWA_3=FE(22.3=100)
C2:
PF137681=VWA_3=FE(15.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTGCTTGTGGATGAGCTC
R:
CTTTATTGTTGCAGGCAATCCA
Band lengths:
163-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]