MmuEX6006561 @ mm10
Exon Skipping
Gene
ENSMUSG00000041460 | Cacna2d4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:MGI Symbol;Acc:MGI:2442632]
Coordinates
chr6:119271216-119271951:+
Coord C1 exon
chr6:119271216-119271305
Coord A exon
chr6:119271409-119271522
Coord C2 exon
chr6:119271873-119271951
Length
114 bp
Sequences
Splice sites
3' ss Seq
GCCTCATCCCTGTCCCTCAGTTC
3' ss Score
7.9
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
CATTTCAAGCAGTTGGTGGATGAGCTGATGGTCAAAGGTGTGGGTGTCGTGAGTCAAGCTCTAATTGAAGCTTTCGAGATCCTGAAACAG
Seq A exon
TTCCAAGAGTCCAAACAAGGAAGTCTCTGCAACCAGGCCATCATGCTTATCACCGATGGGGCTGTGGAAGACTATGAGCCCGTGTTTGAGACCTATAACTGGCCAGACCGAAAG
Seq C2 exon
GTCCGAGTTTTCACTTACCTTATTGGAAGAGAAGTGACTTTCGCTGACCGCATGAAGTGGATCGCCTGCAACAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041460-'11-31,'11-24,16-31=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF137681=VWA_3=FE(17.5=100)
A:
PF137681=VWA_3=FE(22.3=100)
C2:
PF137681=VWA_3=FE(15.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGCAGTTGGTGGATGAGC
R:
TATTGTTGCAGGCGATCCACT
Band lengths:
162-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types