BtaEX6024833 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021994 | CACNA2D4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:HGNC Symbol;Acc:HGNC:20202]
Coordinates
chr5:108784750-108785457:-
Coord C1 exon
chr5:108785368-108785457
Coord A exon
chr5:108785178-108785291
Coord C2 exon
chr5:108784750-108784828
Length
114 bp
Sequences
Splice sites
3' ss Seq
ACAACCACGTCTCCCCACAGTTC
3' ss Score
8.21
5' ss Seq
AAGGTTCCT
5' ss Score
0.89
Exon sequences
Seq C1 exon
CACTTCAAACAGCTGGTGGACGAGTTGATGGTCAAAGGTGTGGGGGTCGTGGACCGAGCCCTCCGTGAAGCCTTCCAGATCCTGCAGCAG
Seq A exon
TTCCAAGAGGCCGGGCAAGGAAGCCTGTGCAACCAGGCCATCATGCTGATCACCGATGGTGCTGTGGAAGACTATGAGCCGGTGCTGGAGAAGTACAACTGGCCAGACCGCAAG
Seq C2 exon
GTCCGGGTCTTCACCTACCTGATTGGGAGGGAAGTGAGTTTTGCTGACCGCTTGAAGTGGATCGCCTGCAACAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021994-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF137681=VWA_3=FE(17.5=100)
A:
PF137681=VWA_3=FE(22.3=100)
C2:
PF137681=VWA_3=FE(15.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACAGCTGGTGGACGAGTTG
R:
CTTTGTTGTTGCAGGCGATCC
Band lengths:
163-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]