DreEX6004569 @ danRer10
Exon Skipping
Gene
ENSDARG00000036420 | CR376787.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E7F9C1]
Coordinates
chr7:20163539-20164830:+
Coord C1 exon
chr7:20163539-20163705
Coord A exon
chr7:20164440-20164579
Coord C2 exon
chr7:20164696-20164830
Length
140 bp
Sequences
Splice sites
3' ss Seq
TGTCTGTCTGTTTTCCCTAGGCA
3' ss Score
12.17
5' ss Seq
CTAGTGAGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
TTGGACCCAGACAACATGTTTAAGAAATGGAAAAAGGTCACCTGTTCTTTGGGCCATGTTGACGTAACCTTGTCACTCAAGTATGTGCCCCACCCTCTGGAGCCTCCAAGCACCACCCCTATCCTGCAGGAACCAGTGTTCTGTGTGCCCATTGGACAAGTGGCAAT
Seq A exon
GCAAGAGAGTGTGCTGGTCCCACACATTGTCCGTTCCTGTGTGGAGGAGGTTGAGAGAAGGGGTCTGAAAGAAGAAGGCATCTACAGAATTTCAGGAGCAAGCACGGAGATACAAGCACTAAAATATGCATTTAACACTA
Seq C2 exon
ATTACCGCGAGGCTGTGAGTAAACTGAGGAGTGTTGATGTGAATGCAGTCTCGGGCACCCTTAAACTCTACTTTAGAGAACTTCCTTTACCTCTTATACCTTGTGAGCATTTCAGTGAGCTTTCAGATGCACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036420-'16-18,'16-17,17-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062022=RhoGAP=PU(26.0=83.3)
C2:
PF0062022=RhoGAP=FE(29.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGTTCTTTGGGCCATGT
R:
GCTCACTGAAATGCTCACAAGG
Band lengths:
249-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]