DreEX6010693 @ danRer10
Exon Skipping
Gene
ENSDARG00000035565 | atp6v0a2b
Description
ATPase, H+ transporting, lysosomal V0 subunit a2b [Source:ZFIN;Acc:ZDB-GENE-060526-4]
Coordinates
chr5:24052137-24052798:+
Coord C1 exon
chr5:24052137-24052276
Coord A exon
chr5:24052379-24052536
Coord C2 exon
chr5:24052708-24052798
Length
158 bp
Sequences
Splice sites
3' ss Seq
CTTTGTGTTTATTTGTTTAGATC
3' ss Score
8.49
5' ss Seq
GACGTGAGT
5' ss Score
9.22
Exon sequences
Seq C1 exon
CTCCATATACAATCATCACCTTTCCCTTCCTGTTTGCGGTGATGTTTGGAGACCTTGGTCATGGCATTATCATGGCTCTGTTTGCTCTGTGGATGGTTCTCTATGAGAACGACCGCAAATTGAAGAAAACCAGGAATGAG
Seq A exon
ATCTGGAACATTTTTTTCGAAGGCCGCTACATCATCCTGCTGATGGGAGTATTTTCAGTCTACACTGGATTAATATACAATGACTGCTTCTCCAAATCACTCAATATATTCGGCTCGGGCTGGAATGTCAGTGCCATGTTTGAGAATGGAGACTGGAC
Seq C2 exon
GTTGTCCACAGTAAACTCAAATAAGTTACTTGCACTGGATCCAAACATCACAGGAGTTTTTAAAGGGCCTTATCCACTGGGCATTGACCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035565-'10-17,'10-16,11-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(5.7=100)
A:
PF0149614=V_ATPase_I=FE(6.4=100)
C2:
PF0149614=V_ATPase_I=FE(3.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATATACAATCATCACCTTTCCCT
R:
TCAATGCCCAGTGGATAAGGC
Band lengths:
226-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]