MmuEX6021026 @ mm9
Exon Skipping
Gene
ENSMUSG00000038023 | Atp6v0a2
Description
ATPase, H+ transporting, lysosomal V0 subunit A2 [Source:MGI Symbol;Acc:MGI:104855]
Coordinates
chr5:125193072-125193829:+
Coord C1 exon
chr5:125193072-125193208
Coord A exon
chr5:125193452-125193639
Coord C2 exon
chr5:125193739-125193829
Length
188 bp
Sequences
Splice sites
3' ss Seq
CTCACGGTGTCTTCTCCCAGATC
3' ss Score
8.81
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
CTCTCTTTACCATCATCACCTTCCCGTTCCTGTTTGCTGTGATGTTTGGCGACTTTGGGCACGGCTTTGTCATGTTCCTGTTTGCCCTCTTACTGGTGTTAAATGAGAATCACCCCAGACTAAGCCAGTCACAGGAG
Seq A exon
ATCCTTAGGATGTTCTTTGACGGCCGGTATATCCTGCTGCTGATGGGGCTGTTCTCTGTGTACACCGGCCTCATCTACAACGACTGCTTCTCCAAGTCTGTGAACCTCTTTGGTTCTGGGTGGAACGTATCTGCCATGTACAGCTCCAGCCACTCTCCAGAGGAGCAGAGGAAGATGGTACTTTGGAA
Seq C2 exon
TGACAGCACCATCAGGCACAGCAGGACTTTGCAGCTGGACCCGAATATCCCTGGAGTTTTCCGAGGCCCCTACCCTTTTGGCATTGATCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038023-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(5.5=100)
A:
PF0149614=V_ATPase_I=FE(7.6=100)
C2:
PF0149614=V_ATPase_I=FE(3.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTTACCATCATCACCTTCCCG
R:
AGGATCAATGCCAAAAGGGTAGG
Band lengths:
226-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: