HsaEX6069908 @ hg19
Exon Skipping
Gene
ENSG00000185344 | ATP6V0A2
Description
ATPase, H+ transporting, lysosomal V0 subunit a2 [Source:HGNC Symbol;Acc:18481]
Coordinates
chr12:124228748-124229519:+
Coord C1 exon
chr12:124228748-124228884
Coord A exon
chr12:124229144-124229331
Coord C2 exon
chr12:124229429-124229519
Length
188 bp
Sequences
Splice sites
3' ss Seq
CCCCGCCTTGCCCTTCACAGATC
3' ss Score
11.27
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
CTCTCTTTACCATCATCACCTTCCCGTTTTTATTTGCTGTGATGTTTGGAGACTTCGGACATGGCTTTGTGATGTTTTTATTTGCCCTCTTGTTGGTGTTAAATGAAAATCATCCCAGACTAAATCAGTCACAAGAG
Seq A exon
ATCATGAGGATGTTTTTTAATGGCCGGTACATCCTCCTGCTGATGGGGCTGTTCTCAGTGTACACTGGCCTCATCTACAACGACTGCTTTTCAAAGTCAGTCAACCTGTTCGGCTCTGGGTGGAACGTGTCGGCCATGTACAGCTCCAGCCACCCACCCGCAGAGCATAAGAAGATGGTGCTTTGGAA
Seq C2 exon
TGACAGCGTCGTTAGACACAACAGCATTTTGCAGCTGGATCCAAGCATTCCTGGAGTGTTCCGAGGCCCTTATCCCCTTGGCATTGATCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185344-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(13.7=100)
A:
PF0149614=V_ATPase_I=FE(7.6=100)
C2:
PF0149614=V_ATPase_I=FE(3.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTTACCATCATCACCTTCCCG
R:
AGGATCAATGCCAAGGGGATA
Band lengths:
226-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)