HsaEX6069908 @ hg38
Exon Skipping
Gene
ENSG00000185344 | ATP6V0A2
Description
ATPase H+ transporting V0 subunit a2 [Source:HGNC Symbol;Acc:HGNC:18481]
Coordinates
chr12:123744201-123744972:+
Coord C1 exon
chr12:123744201-123744337
Coord A exon
chr12:123744597-123744784
Coord C2 exon
chr12:123744882-123744972
Length
188 bp
Sequences
Splice sites
3' ss Seq
CCCCGCCTTGCCCTTCACAGATC
3' ss Score
11.27
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
CTCTCTTTACCATCATCACCTTCCCGTTTTTATTTGCTGTGATGTTTGGAGACTTCGGACATGGCTTTGTGATGTTTTTATTTGCCCTCTTGTTGGTGTTAAATGAAAATCATCCCAGACTAAATCAGTCACAAGAG
Seq A exon
ATCATGAGGATGTTTTTTAATGGCCGGTACATCCTCCTGCTGATGGGGCTGTTCTCAGTGTACACTGGCCTCATCTACAACGACTGCTTTTCAAAGTCAGTCAACCTGTTCGGCTCTGGGTGGAACGTGTCGGCCATGTACAGCTCCAGCCACCCACCCGCAGAGCATAAGAAGATGGTGCTTTGGAA
Seq C2 exon
TGACAGCGTCGTTAGACACAACAGCATTTTGCAGCTGGATCCAAGCATTCCTGGAGTGTTCCGAGGCCCTTATCCCCTTGGCATTGATCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185344-'26-25,'26-23,28-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(13.7=100)
A:
PF0149614=V_ATPase_I=FE(7.6=100)
C2:
PF0149614=V_ATPase_I=FE(3.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTTACCATCATCACCTTCCCG
R:
AGGATCAATGCCAAGGGGATA
Band lengths:
226-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains