MmuEX6021026 @ mm10
Exon Skipping
Gene
ENSMUSG00000038023 | Atp6v0a2
Description
ATPase, H+ transporting, lysosomal V0 subunit A2 [Source:MGI Symbol;Acc:MGI:104855]
Coordinates
chr5:124712701-124713458:+
Coord C1 exon
chr5:124712701-124712837
Coord A exon
chr5:124713081-124713268
Coord C2 exon
chr5:124713368-124713458
Length
188 bp
Sequences
Splice sites
3' ss Seq
CTCACGGTGTCTTCTCCCAGATC
3' ss Score
8.81
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
CTCTCTTTACCATCATCACCTTCCCGTTCCTGTTTGCTGTGATGTTTGGCGACTTTGGGCACGGCTTTGTCATGTTCCTGTTTGCCCTCTTACTGGTGTTAAATGAGAATCACCCCAGACTAAGCCAGTCACAGGAG
Seq A exon
ATCCTTAGGATGTTCTTTGACGGCCGGTATATCCTGCTGCTGATGGGGCTGTTCTCTGTGTACACCGGCCTCATCTACAACGACTGCTTCTCCAAGTCTGTGAACCTCTTTGGTTCTGGGTGGAACGTATCTGCCATGTACAGCTCCAGCCACTCTCCAGAGGAGCAGAGGAAGATGGTACTTTGGAA
Seq C2 exon
TGACAGCACCATCAGGCACAGCAGGACTTTGCAGCTGGACCCGAATATCCCTGGAGTTTTCCGAGGCCCCTACCCTTTTGGCATTGATCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038023-'24-28,'24-25,26-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(5.5=100)
A:
PF0149614=V_ATPase_I=FE(7.6=100)
C2:
PF0149614=V_ATPase_I=FE(3.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTTACCATCATCACCTTCCCG
R:
AGGATCAATGCCAAAAGGGTAGG
Band lengths:
226-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types