GgaEX0004202 @ galGal4
Exon Skipping
Gene
ENSGALG00000003194 | ATP6V0A2
Description
V-type proton ATPase 116 kDa subunit a isoform 2 [Source:RefSeq peptide;Acc:NP_990054]
Coordinates
chr15:4914018-4915783:-
Coord C1 exon
chr15:4915644-4915783
Coord A exon
chr15:4914566-4914723
Coord C2 exon
chr15:4914018-4914108
Length
158 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTAATATATTTGCAGATA
3' ss Score
8.77
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
CTCTCTATACCATCATCACTTTTCCCTTCTTGTTTGCTGTTATGTTTGGAGACTTTGGGCACGGTCTGCTAATGTTCATCTTTGCACTCCTGACAATACTGTATGAAAACCATCCTAGATTACGAAGATCACAGGATGAG
Seq A exon
ATAATAAAAATGCTATTCGATGGCCGATACGTCATTCTATTGATGAGTTTGTTTTCTATATACACTGGTCTGATTTACAATGATTGTTTTTCAAAGTCGTTAAATATATTTGGTTCCGGGTGGAATGTTTCAGCAATGTTTGAACAGAATGTTTGGCG
Seq C2 exon
TCTTGAGGATCTGAAGTCTCATCAGCTTTTAATGCTGGATCCAAATGTTACTGGTGTGTACAATGGAGCTTATCCCTTTGGAATTGATCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003194_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(5.7=100)
A:
PF0149614=V_ATPase_I=FE(6.5=100)
C2:
PF0149614=V_ATPase_I=FE(3.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTATACCATCATCACTTTTCCCT
R:
CGGATCAATTCCAAAGGGATAAGC
Band lengths:
230-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]