RnoEX6064251 @ rn6
Exon Skipping
Gene
ENSRNOG00000052704 | Atp6v0a2
Description
ATPase H+ transporting V0 subunit a2 [Source:RGD Symbol;Acc:621006]
Coordinates
chr12:37376977-37377849:-
Coord C1 exon
chr12:37377713-37377849
Coord A exon
chr12:37377163-37377350
Coord C2 exon
chr12:37376977-37377067
Length
188 bp
Sequences
Splice sites
3' ss Seq
CTCATGGTGTCTTCTCCCAGATC
3' ss Score
8.74
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
CTTTGTTCACCATCATCACCTTCCCGTTCCTGTTTGGCGTGATGTTTGGTGACTTGGGGCACGGCTTTGTCATGTTCCTGTTTGCCCTCTTACTGGTGTTGAATGAGAATCACCCCAGACTAAGCCAGTCACAGGAG
Seq A exon
ATCCTTAGGATGTTCTTTGATGGCCGATATATCCTGCTGCTGATGGGGCTGTTCTCCGTGTACACCGGCCTCATCTACAACGACTGCTTCTCCAAGTCCCTGAACCTCTTTGGCTCTGGGTGGAACGTGTCTGCCATGTACAGTTCCAGCCACTCCCCAGAGGAGCAAAGGAAAATGGTGCTTTGGAA
Seq C2 exon
TGACAGCACCATCAGGCACAGCAGGACGCTGCAGCTGGACCCAAACATCCCTGGAGTTTTCCGAGGCCCCTACCCTTTCGGCATCGATCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052704-'46-42,'46-41,47-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=PD(0.1=0.0),PF0149614=V_ATPase_I=FE(10.2=100)
A:
PF0149614=V_ATPase_I=FE(14.0=100)
C2:
PF0149614=V_ATPase_I=FE(3.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCATCATCACCTTCCCGT
R:
GAAAGGGTAGGGGCCTCGG
Band lengths:
210-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]