DreEX6021992 @ danRer10
Exon Skipping
Gene
ENSDARG00000044433 | sned1
Description
sushi, nidogen and EGF-like domains 1 [Source:ZFIN;Acc:ZDB-GENE-100913-1]
Coordinates
chr6:27479651-27484990:+
Coord C1 exon
chr6:27479651-27479767
Coord A exon
chr6:27482398-27482541
Coord C2 exon
chr6:27484817-27484990
Length
144 bp
Sequences
Splice sites
3' ss Seq
ATCTGATGCTTTATGTTTAGGAA
3' ss Score
6.67
5' ss Seq
AGGGTAATC
5' ss Score
4.62
Exon sequences
Seq C1 exon
TCAGATTAAGTATCTGTGCTTCTAGTCCCTGTCGTAATGGAGGTTCTTGTAAAGAAGAAGCTGACAGCTACCATTGTGTCTGCCCCTACCGTTTCACAGGGAAACACTGTGAAGTGG
Seq A exon
GAAAGCCAGATCCATGTGCTTCCAGTCCCTGTCGAAATGGGGGAACATGTTTCCACTACATCGGTAAATACAAATGCGAGTGCTCCCCGTCCTTCATGGGAAGACACTGCGAGATCAACAGAGGCTCTAATCCAGCTTTGGAGG
Seq C2 exon
GTCTAGACTGTGGCCCCCCTGTGAAAGCTAAGCATGCAGAGGTACAGTATTCCTCCACTACTCCAGGCTCCATGGCTCTGTATTTATGCCACCCAGGCTACACTCCCCTCACTAGGGCCACCCAGATCATCTGCAGCAGCCAGGGGTCCTGGAGCCAGCCTCCAGTCTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044433-'15-19,'15-17,16-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.034
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=77.5)
A:
PF0000822=EGF=WD(100=63.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCTTCTAGTCCCTGTCGT
R:
CTGCTGCAGATGATCTGGGTG
Band lengths:
242-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]