DreEX6023064 @ danRer10
Exon Skipping
Gene
ENSDARG00000016348 | dip2bb
Description
DIP2 disco-interacting protein 2 homolog Bb (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-100729-4]
Coordinates
chr6:39554304-39554729:-
Coord C1 exon
chr6:39554706-39554729
Coord A exon
chr6:39554511-39554591
Coord C2 exon
chr6:39554304-39554427
Length
81 bp
Sequences
Splice sites
3' ss Seq
GTCTCTGTTTTCTTTTTTAGCAT
3' ss Score
12.07
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
CTGTGCATGTGGCCTACTATGATG
Seq A exon
CATCAGTTCCTCACTGAAGCTTTACAGTGGAGAGCTCAAACAGATCCCGACCATACGCTTTATGTGCTTTTGAATGCAAAG
Seq C2 exon
GGAGTGGCGGTGTGTACAGCTACATGTGTGCAGCTTCATAAAAGAGCAGAGAAAATCGCTGCTGCTCTCATGGAGAGAAGTGGCATTAACATCGGAGAAAATGTGGTGCTTTTGTATCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016348-'28-29,'28-28,29-29=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0050123=AMP-binding=PU(4.0=70.4)
C2:
PF0050123=AMP-binding=FE(8.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCATGTGGCCTACTATGA
R:
TGGAGGATACAAAAGCACCACA
Band lengths:
146-227
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]