DreEX6023282 @ danRer10
Exon Skipping
Gene
ENSDARG00000021720 | col7a1
Description
collagen, type VII, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2427]
Coordinates
chr6:40228308-40230597:-
Coord C1 exon
chr6:40230553-40230597
Coord A exon
chr6:40228430-40228465
Coord C2 exon
chr6:40228308-40228343
Length
36 bp
Sequences
Splice sites
3' ss Seq
TCTATCGAACTTTTTTTCAGGGC
3' ss Score
8.5
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
GGTAAAGCAGGGGAGGACGGCAAATCAGGACTGCCTGGAAAGACT
Seq A exon
GGCGAAGATGGCGTGCCAGGAGAGGATGGTCGAAAG
Seq C2 exon
GGAGATAAAGGAGAGCAGGGGCCTGCTGGAAGAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021720-'70-73,'70-72,71-73=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(17.1=100)
A:
PF0139113=Collagen=FE(13.4=100),PF0139113=Collagen=PU(18.3=91.7)
C2:
PF0139113=Collagen=PD(11.0=75.0),PF0139113=Collagen=FE(18.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAAAGCAGGGGAGGACGG
R:
TCTCTTCCAGCAGGCCCC
Band lengths:
80-116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]