HsaEX0016653 @ hg19
Exon Skipping
Gene
ENSG00000114270 | COL7A1
Description
collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:2214]
Coordinates
chr3:48614317-48615798:-
Coord C1 exon
chr3:48615754-48615798
Coord A exon
chr3:48614425-48614460
Coord C2 exon
chr3:48614317-48614352
Length
36 bp
Sequences
Splice sites
3' ss Seq
TGTGAGTCCTCTGCCCACAGGGA
3' ss Score
8.8
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GGAAAGCCAGGCGAGGATGGCAAACCTGGCCTGAATGGAAAAAAC
Seq A exon
GGAGAACCTGGGGACCCTGGAGAAGACGGGAGGAAG
Seq C2 exon
GGAGAGAAAGGAGATTCAGGCGCCTCTGGGAGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114270-'65-68,'65-67,66-68
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(15.9=100),PF0139113=Collagen=FE(15.4=100)
A:
PF0139113=Collagen=FE(13.4=100),PF0139113=Collagen=PU(12.9=66.7)
C2:
PF0139113=Collagen=FE(13.4=100),PF0139113=Collagen=FE(17.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGCCAGGCGAGGATGG
R:
TTCTCTCCCAGAGGCGCC
Band lengths:
80-116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)