DreEX6025003 @ danRer10
Exon Skipping
Gene
ENSDARG00000022309 | dspa
Description
desmoplakin a [Source:ZFIN;Acc:ZDB-GENE-030131-2743]
Coordinates
chr2:1811107-1813350:+
Coord C1 exon
chr2:1811107-1811269
Coord A exon
chr2:1813016-1813099
Coord C2 exon
chr2:1813243-1813350
Length
84 bp
Sequences
Splice sites
3' ss Seq
TGTATATGTTCAATAAACAGGCG
3' ss Score
6.07
5' ss Seq
AAGGTGATA
5' ss Score
4.18
Exon sequences
Seq C1 exon
GACATGGGACCTGGAGAAGCAAGAGAAACAGCTGAATCACTACCAGCAGACCAGCTCCACGATAAACAGATGGATTCAGGACACACGTCAGCGCCAAGACACCCTGCAGATTACCAAATTCAACAGCGTGGACAATTTAATGGACCACCTCAACCAGCAAAAA
Seq A exon
GCGCTTTATTCTGAGATCAAGGGGAAGAAAGAAAAGGTGGATGCTGTGGTCAAAGACTCAGACACATGTGCTGCCTCCATAAAG
Seq C2 exon
GACTACGAGCTCCAGTTGGCGTCTTATAGTGCAGGTCTGGAGACTCTGCTCAACATTCCCATCAAAAAGACTATGCTGCAGTCTCCAGCCACTGTTCTCCGGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022309-'21-24,'21-23,22-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.000 C2=0.056
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PU(51.1=81.8)
A:
PF0043516=Spectrin=FE(30.7=100)
C2:
PF0043516=Spectrin=PD(14.8=36.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGACCAGCTCCACGATAA
R:
TGAGCAGAGTCTCCAGACCTG
Band lengths:
171-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]